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pmemd.cuda program  (Molecular Dynamics Inc)

 
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    Molecular Dynamics Inc pmemd.cuda program
    Pmemd.Cuda Program, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pmemd%2Ecuda+program/pmemd+cuda/pmc12053578__41467_2025_59490_MOESM2_ESM-11-7-0
    Average 90 stars, based on 1 article reviews
    pmemd.cuda program - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Trapping of spermine, Kukoamine A, and polyamine toxin blockers in GluK2 kainate receptor channels.
    Article Snippet: Molecular dynamics simulation protocols “pmemd.cuda” programof the Amber20molecular dynamics software package was used for all MD simulations110.

    Article Title: Kainate receptor channel opening and gating mechanism.
    Article Snippet: Molecular dynamics simulation protocols The Pmemd.cuda program of the Amber20 molecular dynamics software package was used for all molecular dynamics simulations64.

    Article Title: Selectivity and Promiscuity in TET-mediated oxidation of 5-methylcytosine in DNA and RNA
    Article Snippet: Molecular dynamics (MD) simulations were performed using the ff99SB force field with the pmemd.cuda program from the AMBER16 software suite 30 , 31 .

    Article Title: Structural basis of selective TRPM7 inhibition by the anticancer agent CCT128930.
    Article Snippet: Molecular dynamics simulation protocols ‘‘pmemd.cuda’’ program of the Amber20 molecular dynamics software package was used for all MD simulations.50 Amber FF99SB– ILDN force field parameters were used for protein and ions, TIP3P model for water, and Lipid1458,59 force field parameters for lipids.

    Article Title: Structural basis of selective TRPM7 inhibition by the anticancer agent CCT128930
    Article Snippet: “pmemd.cuda” program of the Amber20 molecular dynamics software package was used for all MD simulations.

    Article Title: Rational development of gemcitabine-based nanoplatform for targeting SERPINB9/Granzyme B axis to overcome chemo-immune-resistance
    Article Snippet: Molecular dynamics (MD) simulations were performed using PMEMD.cuda program built in AMBER 22 software package.

    Article Title: Kainate receptor channel opening and gating mechanism
    Article Snippet: The Pmemd.cuda program of the Amber20 molecular dynamics software package was used for all molecular dynamics simulations .



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